kallisto
This project was last updated September 28, 2022 byCloodo
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About Up kallisto
According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. And since it uses pseudoalignment, it is robust to errors in the reads and preserves the key information needed for quantification. This makes kallisto not only fast but highly accurate as well. In many benchmarks, it even greatly outperforms existing tools.
- Uses pseudoalignment
- Fast and accurate
- Quantified bulk RNA-Seq can be analyzed with sleuth
- Can be used with bustools to pre-process single-cell RNA-seq data
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